rs13502543 SNP Detail

Summary

• ID
  rs13502543
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36926208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACTGAAC TCTAATTTGC
  CTAGCAAACC GTATTTTAAA GACTAAAACA CTTGTGACTG TAGATGCCCC ATTCACCAGC
  ATGTACTATG AATGTGGCTC TAAATTATGC ACAGAAGACA AGTAGTTTTA CATTGTCCCC
  TCCACCACTA CTACCCCTGA CCCCCACCAC CACCCCTGCG CCGCCAAAAA AATTAGTGCT
  R
  CTTTTTGGTT AAACTCATTT TGATGTCTGG AGAACATCTA AACTCATTTC ATTTATACAG
  TACAATTTAA TCTTGAAAAC AGAATCAGCC AACACCCTAG AATGAAGCAT TCGCCACTCT
  AACGAGTGCT TAAAATATGT TGTTTGTGGA AGAGGTTTGC TAGGCAGGAA ATTGCCTAGC
  AGGGAACCTA GCTCAATTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20418106	PS02183795	PERLEGEN	MM_PANEL	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13502543					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36926208 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9878	CpG island 9878	579 bp proximal
Hars2	histidyl-tRNA synthetase 2	593 bp downstream
Rr405606	regulatory region 405606	526 bp upstream
Rr536210	regulatory region 536210	231 bp proximal
Tssr150673	transcription start site region 150673	677 bp upstream
Tssr150674	transcription start site region 150674	763 bp upstream
Tssr150675	transcription start site region 150675	1947 bp upstream
Zmat2	zinc finger, matrin type 2	768 bp upstream