rs16782775 SNP Detail

Summary

• ID
  rs16782775
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107970909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGGGATA GGCACAGAGC
  ACAACACCCT AAGGACACAT GGCGACATTT ATGAAAGGCT AGCAAGGCAG GTGGCTGCGG
  TCTTGTCTAC AGACTGCTCC TGTCACACTT ACTCCCCCCG GGTTTCCACA CTGTTGCCCG
  CAGGCCCGGC AAACACCACC GAGTCTCCAT CATGGAACAC TAGGTACTGG CGGCAGAATC
  K
  GATGTTCTCC ATTCGATCCA AGTCCCTCTG AGTCCACTCT GCAAGGGAGG CAGGGGGCTG
  CTCAACTTGT CTGGGCCAGT TTGGACCACT GCCCACCAAT CAAGGCCTAT CTTTCCCAGT
  CTGTCTCCGG ACAGCCTGAG TATAGCCTGG ACAACACTTC ACTTAATATA ACCTAAGCCT
  AGGCTCCCAG AGCCTGAGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24740650	apeh_AP48_8	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G		G	G			G	G	G	G	G	G		G	G		T
ss24740658	apeh_AP49_8	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T
ss24740765	apeh_AP60_9	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T
ss24740768	apeh_AP61_3	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16782775					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107970909 () rs orientation: forward

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	within coordinates
Cpgi22322	CpG island 22322	370 bp proximal
Gm57046	predicted gene, 57046	945 bp upstream
Rr401675	regulatory region 401675	711 bp upstream
Rr686707	regulatory region 686707	565 bp proximal
Rr686708	regulatory region 686708	862 bp proximal
Rr686709	regulatory region 686709	886 bp proximal
Tssr87065	transcription start site region 87065	947 bp upstream
Tssr87066	transcription start site region 87066	1482 bp upstream
Tssr87067	transcription start site region 87067	1527 bp upstream
Tssr91491	transcription start site region 91491	749 bp downstream
Tssr91492	transcription start site region 91492	817 bp downstream