rs16782818 SNP Detail

Summary

• ID
  rs16782818
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107970490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCC CAGCTAACTG GGACTCTGAA
  M
  TCATACCAGC CCATGAAGCA CTCCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24740644	apeh_AP48_2	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	C		A	A	A	C	A	C	A	A	C	A	C
ss24740652	apeh_AP49_2	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	A	C	A	A	C	A	C
ss24740758	apeh_AP60_2	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	A	C	A	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16782818					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	A	C	A	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107970490 () rs orientation: forward

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	within coordinates
Cpgi22322	CpG island 22322	789 bp proximal
Gm57046	predicted gene, 57046	1364 bp upstream
Rr401675	regulatory region 401675	1130 bp upstream
Rr686707	regulatory region 686707	984 bp proximal
Rr686708	regulatory region 686708	1281 bp proximal
Rr686709	regulatory region 686709	1305 bp proximal
Tssr87065	transcription start site region 87065	1366 bp upstream
Tssr87066	transcription start site region 87066	1901 bp upstream
Tssr87067	transcription start site region 87067	1946 bp upstream
Tssr91491	transcription start site region 91491	1168 bp downstream
Tssr91492	transcription start site region 91492	1236 bp downstream