rs16782819 SNP Detail

Summary

• ID
  rs16782819
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107970562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGAGTCTC TGTCTCTGTC
  TGTCTGTCTG TCTCTCTCTC CTTTCTTTAT AAGCCCTTTT AGGTCTGGCG TTATAAAATC
  AGAATTGGCC GCACAGGAGG CTATCTCCCA GCTAACTGGG ACTCTGAAAT CATACCAGCC
  CATGAAGCAC TCCCAGCCTC AAGCTGGCTG GCCTTTTTTC TCTTCCTTAG GTTACTGACT
  B
  GACTGTCTCC AGAGTCCTAG GGACCTAGGC CCTAGTTTAG AAGAAGCTCC TAGTATTTAT
  CAGGCCATGT CTCCAGAGAC CAGACAAGCT CTCAGGGGTC AGGCACCTTG CTCTTTGCTC
  CCCTGAAGCC ACCCAAAGTT GTCCCTGAAG GGGATAGGCA CAGAGCACAA CACCCTAAGG
  ACACATGGCG ACATTTATGA                                            
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24740645	apeh_AP48_3	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C			C	C	C	C	C	C	G	C	C	C	T
ss24740653	apeh_AP49_3	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
ss24740759	apeh_AP60_3	ROCHEBIO	RPAMM	f	SNP	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16782819					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107970562 () rs orientation: forward

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	within coordinates
Cpgi22322	CpG island 22322	717 bp proximal
Gm57046	predicted gene, 57046	1292 bp upstream
Rr401675	regulatory region 401675	1058 bp upstream
Rr686707	regulatory region 686707	912 bp proximal
Rr686708	regulatory region 686708	1209 bp proximal
Rr686709	regulatory region 686709	1233 bp proximal
Tssr87065	transcription start site region 87065	1294 bp upstream
Tssr87066	transcription start site region 87066	1829 bp upstream
Tssr87067	transcription start site region 87067	1874 bp upstream
Tssr91491	transcription start site region 91491	1096 bp downstream
Tssr91492	transcription start site region 91492	1164 bp downstream