rs16782824 SNP Detail

Summary

• ID
  rs16782824
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107971189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGACCAC TGCCCACCAA
  TCAAGGCCTA TCTTTCCCAG TCTGTCTCCG GACAGCCTGA GTATAGCCTG GACAACACTT
  CACTTAATAT AACCTAAGCC TAGGCTCCCA GAGCCTGAGC TGACGGTCAG AGAGAACCCA
  CTACCAACCA CAGAATTTTA AGGGCAACAT AGCTGTTGTT GGGTTGTAGA ATGTAAGGGC
  Y
  GGAGAGTCCT GCGAGGCCCA CACCTTGCAC TCAGGTCTGA ATTTTACTCC CACACCTTCA
  ACTCATTTAC GGAATTATTT ATCAGTAAGG CTAGTGCAGC CCCCAAAACA CCTGTGCGCA
  GGAACTACAG TTGGGTTTCC TCCCCAAACC CGTGTCAAGC AGCGTGCCCT CCACAGTCCC
  CATCTCTCCA CCTGGATGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24740678	apeh_AP50_5	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
ss24740682	apeh_AP51_3	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
ss24740774	apeh_AP61_9	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16782824					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107971189 () rs orientation: forward

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	within coordinates
Cpgi22322	CpG island 22322	90 bp proximal
Gm57046	predicted gene, 57046	665 bp upstream
Rr401675	regulatory region 401675	431 bp upstream
Rr686707	regulatory region 686707	285 bp proximal
Rr686708	regulatory region 686708	582 bp proximal
Rr686709	regulatory region 686709	606 bp proximal
Rr686710	regulatory region 686710	1766 bp proximal
Tssr87065	transcription start site region 87065	667 bp upstream
Tssr87066	transcription start site region 87066	1202 bp upstream
Tssr87067	transcription start site region 87067	1247 bp upstream
Tssr91491	transcription start site region 91491	469 bp downstream
Tssr91492	transcription start site region 91492	537 bp downstream