rs16782825 SNP Detail

Summary

• ID
  rs16782825
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:107971236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTT GCACTCAGGT CTGAATTTTA
  Y
  TCCCACACCT TCAACTCATT TACGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24740679	apeh_AP50_6	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	C	C	T	C	C
ss24740683	apeh_AP51_4	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	C	C	T	C	C
ss24740775	apeh_AP61_10	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16782825					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107971236 () rs orientation: forward

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	Intron
Bsn	bassoon	1985 bp downstream
Cpgi22322	CpG island 22322	43 bp proximal
Gm57046	predicted gene, 57046	618 bp upstream
Rr401675	regulatory region 401675	384 bp upstream
Rr686707	regulatory region 686707	238 bp proximal
Rr686708	regulatory region 686708	535 bp proximal
Rr686709	regulatory region 686709	559 bp proximal
Rr686710	regulatory region 686710	1719 bp proximal
Tssr87065	transcription start site region 87065	620 bp upstream
Tssr87066	transcription start site region 87066	1155 bp upstream
Tssr87067	transcription start site region 87067	1200 bp upstream
Tssr91491	transcription start site region 91491	422 bp downstream
Tssr91492	transcription start site region 91492	490 bp downstream