rs16783363 SNP Detail

Summary

• ID
  rs16783363
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107970803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TGGTCACAAN CTCTTAGCTG AGTCTCTGTC TCTGTCTGTC
  TGTCTGTCTN CNCTCTCTCC TTTCTTTATA AGCCCTTTTA GGTCTGGNGT TATAAAATCA
  GAATTGGCCG CACAGGAGGC TATCTCCCAG CTAACTGGGA CTCTGAANTC ATACCAGCCC
  ATGAAGCACT CCCAGCCTCA AGCTGGCTGG CCTTTTTTCT CTTCCTTAGG TTACTGACTN
  GACTGTCTCC AGAGTCCTAG GGACCTAGGC CCTAGTTTAG AAGAAGCTCC TAGTATTTAT
  CAGGCCATGT CTCCAGAGAN CAGACAAGCT CTCAGGGGTC AGGCACCTTG CTCTTTGCTC
  CCCTGAAGCC ACCCAAAGTT GTCCCTGAAG GGGATAGGCA CAGAGCACAA CACCCTAAGG
  ACACATGGCG ACATTTATGA AAGGCTAGCA NGGCAGGTGG CTGCNGTCTT GTCTACAGAC
  Y
  GCTCCTGTCA CACTTACTCC CCCCGGGTTT CCACACTGTT GCCCGCAGGC CCGGCAAACA
  CCACCGAGTC TCCATCATGG AACACTAGGT ACTGGCGGCA GAATCNGATG TTCTCCATTN
  GATCCAAGTC CCTCTGAGTC CACTCTGCAA GGGAGGCAGG GGGCTGCTCA ACT       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24740657	apeh_AP49_7	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
ss24740764	apeh_AP60_8	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16783363					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107970803 () rs orientation: forward

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	within coordinates
Cpgi22322	CpG island 22322	476 bp proximal
Gm57046	predicted gene, 57046	1051 bp upstream
Rr401675	regulatory region 401675	817 bp upstream
Rr686707	regulatory region 686707	671 bp proximal
Rr686708	regulatory region 686708	968 bp proximal
Rr686709	regulatory region 686709	992 bp proximal
Tssr87065	transcription start site region 87065	1053 bp upstream
Tssr87066	transcription start site region 87066	1588 bp upstream
Tssr87067	transcription start site region 87067	1633 bp upstream
Tssr91491	transcription start site region 91491	855 bp downstream
Tssr91492	transcription start site region 91492	923 bp downstream