rs16783365 SNP Detail

Summary

• ID
  rs16783365
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107970923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TGGTCACAAN CTCTTAGCTG AGTCTCTGTC TCTGTCTGTC
  TGTCTGTCTN CNCTCTCTCC TTTCTTTATA AGCCCTTTTA GGTCTGGNGT TATAAAATCA
  GAATTGGCCG CACAGGAGGC TATCTCCCAG CTAACTGGGA CTCTGAANTC ATACCAGCCC
  ATGAAGCACT CCCAGCCTCA AGCTGGCTGG CCTTTTTTCT CTTCCTTAGG TTACTGACTN
  GACTGTCTCC AGAGTCCTAG GGACCTAGGC CCTATTGGTC ACAANCTCTT AGCTGAGTCT
  CTGTCTCTGT CTGTCTGTCT GTCTNCNCTC TCTCCTTTCT TTATAAGCCC TTTTAGGTCT
  GGNGTTATAA AATCAGAATT GGCCGCACAG GAGGCTATCT CCCAGCTAAC TGGGACTCTG
  AANTCATACC AGCCCATGAA GCACTCCCAG CCTCAAGCTG GCTGGCCTTT TTTCTCTTCC
  TTAGGTTACT GACTNGACTG TCTCCAGAGT CCTAGGGACC TAGGCCCTAG CCCGGCAAAC
  ACCACCGAGT CTCCATCATG GAACACTAGG TACTGGCGGC AGAATCNGAT GTTCTCCATT
  Y
  GATCCAAGTC CCTCTGAGTC CACTCTGCAA GGGAGGCAGG GGGCTGCTCA ACT       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24740659	apeh_AP49_9	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
ss24740769	apeh_AP61_4	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16783365					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107970923 () rs orientation: forward

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	within coordinates
Cpgi22322	CpG island 22322	356 bp proximal
Gm57046	predicted gene, 57046	931 bp upstream
Rr401675	regulatory region 401675	697 bp upstream
Rr686707	regulatory region 686707	551 bp proximal
Rr686708	regulatory region 686708	848 bp proximal
Rr686709	regulatory region 686709	872 bp proximal
Tssr87065	transcription start site region 87065	933 bp upstream
Tssr87066	transcription start site region 87066	1468 bp upstream
Tssr87067	transcription start site region 87067	1513 bp upstream
Tssr91491	transcription start site region 91491	735 bp downstream
Tssr91492	transcription start site region 91492	803 bp downstream