rs16783367 SNP Detail

Summary

• ID
  rs16783367
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107971102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                       CTATCT TTCCCANTCT GTCTCCGGAC
  AGCCNGAGNA NAGCCTGGAC NACACTTCAC TTAATATAAC CTAAGCCTAG GCTCCCAGAG
  Y
  CTGAGCTGAC GGTCAGAGAG AACCCACTAC CAACCACAGA ATTTTAANGG NCAACATAGC
  TGTTGTTGGG TTGTAGAATG TAAGGGCNGG AGAGTCCTGC GAGGCCCACA CCTTGCACTC
  AGGTCTGAAT TTTANTCCCA CACCTTCAAC TCATTTACGG AATTATTTAT CAGTAAGGCT
  AGTGCAGCCC CCAAAACACC TGTGCGCAGG AACTACAGTT GGGTTTCCTC CCCAAACCCG
  TGTCAAGCAG CGTGCCTGAG CTGACGGTCA GAGAGAACCC ACTACCAACC ACAGAATTTT
  AANGGNCAAC ATAGCTGTTG TTGGGTTGTA GAATGTAAGG GCNGGAGAGT CCTGCGAGGC
  CCACACCTTG CACTCAGGTC TGAATTTTAN TCCCACACCT TCAACTCATT TACGGAATTA
  TTTATCAGTA AGGCTAGTGC AGCCCCCAAA ACACCTGTGC GCAGGAACTA CAGTTGGGTT
  TCCTCCCCAA ACCCGTGTCA AGCAGCGTGC GGGCCACGGG CCGAGCCCTC ACCTGACGCT
  CCATA                                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24740675	apeh_AP50_2	ROCHEBIO	RPAMM	f	SNP	C	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
ss24740771	apeh_AP61_6	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16783367					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107971102 () rs orientation: forward

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	within coordinates
Cpgi22322	CpG island 22322	177 bp proximal
Gm57046	predicted gene, 57046	752 bp upstream
Rr401675	regulatory region 401675	518 bp upstream
Rr686707	regulatory region 686707	372 bp proximal
Rr686708	regulatory region 686708	669 bp proximal
Rr686709	regulatory region 686709	693 bp proximal
Rr686710	regulatory region 686710	1853 bp proximal
Tssr87065	transcription start site region 87065	754 bp upstream
Tssr87066	transcription start site region 87066	1289 bp upstream
Tssr87067	transcription start site region 87067	1334 bp upstream
Tssr91491	transcription start site region 91491	556 bp downstream
Tssr91492	transcription start site region 91492	624 bp downstream