rs16783820 SNP Detail

Summary

• ID
  rs16783820
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47037480 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTTGC CTTGAGCTCC CCCACGTCCG
  M
  AGATGGCTGG CCTGCTGCCC TGATA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss24735436	Gnmt_2_AN4365_11	ROCHEBIO	RPAMM	f	SNP	A	A	A	A		A	A	A			A	A	A	A	A	A	C
ss24735438	Gnmt_3_AN4367_5	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A		A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs16783820					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47037480 () rs orientation: reverse

Symbol	Name	Function Class
Gnmt	glycine N-methyltransferase	within coordinates
Pex6	peroxisomal biogenesis factor 6	1011 bp downstream
Rr331605	regulatory region 331605	680 bp distal
Rr331606	regulatory region 331606	921 bp proximal
Rr331607	regulatory region 331607	1521 bp proximal
Rr339923	regulatory region 339923	1720 bp proximal
Tssr148377	transcription start site region 148377	231 bp upstream
Tssr148378	transcription start site region 148378	212 bp upstream
Tssr148379	transcription start site region 148379	199 bp upstream
Tssr148380	transcription start site region 148380	155 bp downstream
Tssr148381	transcription start site region 148381	802 bp downstream