rs16784025 SNP Detail

Summary

• ID
  rs16784025
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47037491 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGGCT GTGGCTCTTG CCTTGAGCTC
  Y
  CCCACGTCCG AAGATGGCTG GCCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss24735434	Gnmt_2_AN4365_9	ROCHEBIO	RPAMM	f	SNP	T			C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
ss39527409	mCV25217960	ABI	CRAMUS_MOUSE	r	SNP		A	A		G					G
ss145701258	ENSMUSSNP4290150	ENSEMBL	ENSEMBL_Sanger	r	SNP			A		G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs16784025					SNP	T	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47037491 () rs orientation: reverse

Symbol	Name	Function Class
Gnmt	glycine N-methyltransferase	within coordinates
Pex6	peroxisomal biogenesis factor 6	1022 bp downstream
Rr331605	regulatory region 331605	691 bp distal
Rr331606	regulatory region 331606	910 bp proximal
Rr331607	regulatory region 331607	1510 bp proximal
Rr339923	regulatory region 339923	1709 bp proximal
Tssr148377	transcription start site region 148377	242 bp upstream
Tssr148378	transcription start site region 148378	223 bp upstream
Tssr148379	transcription start site region 148379	210 bp upstream
Tssr148380	transcription start site region 148380	144 bp downstream
Tssr148381	transcription start site region 148381	791 bp downstream