rs16784964 SNP Detail

Summary

• ID
  rs16784964
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80641570 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                         AAATNNTNG TTGNCNGANT CTCTGAGGCC ATTAGCTTCA
  GTCCCTCAAG ATCTGTCCTA CAGAAATTCC CTCAGCTGGA CTCTTNACTG GANATCTTCT
  GGGGCCATGT AGGCCTGAGG GACCCTGATC CAAGGTGTGG AGACCTTGCT TGTAAGGACA
  CAGCAGCTCT GCTGTCATCT GTCTGGAAGG TGTGATCATT GGGGTGTGTC CTGCCATCTT
  GCCCACTACA GNTCCTGAAA GGGTGTATAA GGTTCTGCCT AGCAATCCAG CGAGNCCCCC
  Y
  CCNCCAAACC CCCCTCCCCC ANCTTCTGCC CTAACTCNCT CANTCCCANG GCATCATGGG
  NGCTNNAACA GAGNCCATCN CGTACCTTCA NCCAGATGTA GGNCTANCAA CTGCTGTTNT
  NCANTNTCCC CTANCCAGGC CCCNAGGCGC TGNAGGGCAN ANAGGGTAGC CTGGGAGTCA
  GTGNTNCANA CNCCGNAG                                              
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	BALB/cJ	C57BL/6J	LP/J	NZB/BlNJ	SM/J	SPRET/EiJ
ss24736561	X83733_MC1133_5	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	BALB/cJ	C57BL/6J	LP/J	NZB/BlNJ	SM/J	SPRET/EiJ
rs16784964					SNP	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80641570 () rs orientation: reverse

Symbol	Name	Function Class
Amh	anti-Mullerian hormone	within coordinates
Cpgi1909	CpG island 1909	642 bp proximal
Rr366747	regulatory region 366747	454 bp downstream
Rr435397	regulatory region 435397	1068 bp distal
Rr435398	regulatory region 435398	325 bp proximal
Rr435399	regulatory region 435399	1362 bp proximal
Sf3a2	splicing factor 3a, subunit 2	814 bp downstream
Tssr94618	transcription start site region 94618	1673 bp downstream
Tssr94619	transcription start site region 94619	1646 bp downstream
Tssr94620	transcription start site region 94620	1618 bp downstream
Tssr94621	transcription start site region 94621	1586 bp downstream
Tssr94622	transcription start site region 94622	1509 bp downstream
Tssr94623	transcription start site region 94623	996 bp downstream
Tssr94624	transcription start site region 94624	487 bp downstream
Tssr94625	transcription start site region 94625	392 bp upstream
Tssr94626	transcription start site region 94626	663 bp upstream
Tssr94627	transcription start site region 94627	1094 bp upstream
Tssr94628	transcription start site region 94628	1939 bp upstream
Tssr98515	transcription start site region 98515	1665 bp upstream
Tssr98516	transcription start site region 98516	1897 bp downstream