rs16784965 SNP Detail

Summary

• ID
  rs16784965
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80641567 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                     AA ATNNTNGTTG NCNGANTCTC TGAGGCCATT AGCTTCAGTC
  CCTCAAGATC TGTCCTACAG AAATTCCCTC AGCTGGACTC TTNACTGGAN ATCTTCTGGG
  GCCATGTAGG CCTGAGGGAC CCTGATCCAA GGTGTGGAGA CCTTGCTTGT AAGGACACAG
  CAGCTCTGCT GTCATCTGTC TGGAAGGTGT GATCATTGGG GTGTGTCCTG CCATCTTGCC
  CACTACAGNT CCTGAAAGGG TGTATAAGGT TCTGCCTAGC AATCCAGCGA GNCCCCCNCC
  M
  CCAAACCCCC CTCCCCCANC TTCTGCCCTA ACTCNCTCAN TCCCANGGCA TCATGGGNGC
  TNNAACAGAG NCCATCNCGT ACCTTCANCC AGATGTAGGN CTANCAACTG CTGTTNTNCA
  NTNTCCCCTA NCCAGGCCCC NAGGCGCTGN AGGGCANANA GGGTAGCCTG GGAGTCAGTG
  NTNCANACNC CGNAG                                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	BALB/cJ	C57BL/6J	LP/J	NZB/BlNJ	SPRET/EiJ
ss24736562	X83733_MC1133_6	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	A/HeJ	BALB/cJ	C57BL/6J	LP/J	NZB/BlNJ	SPRET/EiJ
rs16784965					SNP	C	C	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80641567 () rs orientation: reverse

Symbol	Name	Function Class
Amh	anti-Mullerian hormone	within coordinates
Cpgi1909	CpG island 1909	645 bp proximal
Rr366747	regulatory region 366747	451 bp downstream
Rr435397	regulatory region 435397	1065 bp distal
Rr435398	regulatory region 435398	328 bp proximal
Rr435399	regulatory region 435399	1365 bp proximal
Sf3a2	splicing factor 3a, subunit 2	811 bp downstream
Tssr94618	transcription start site region 94618	1670 bp downstream
Tssr94619	transcription start site region 94619	1643 bp downstream
Tssr94620	transcription start site region 94620	1615 bp downstream
Tssr94621	transcription start site region 94621	1583 bp downstream
Tssr94622	transcription start site region 94622	1506 bp downstream
Tssr94623	transcription start site region 94623	993 bp downstream
Tssr94624	transcription start site region 94624	484 bp downstream
Tssr94625	transcription start site region 94625	395 bp upstream
Tssr94626	transcription start site region 94626	666 bp upstream
Tssr94627	transcription start site region 94627	1097 bp upstream
Tssr94628	transcription start site region 94628	1942 bp upstream
Tssr98515	transcription start site region 98515	1662 bp upstream
Tssr98516	transcription start site region 98516	1900 bp downstream