rs16785814 SNP Detail

Summary

• ID
  rs16785814
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:130729096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCAGCACAC ATTAGATACA GAACACATAG
  CCACTCAGGA GAGGCTCTTA TTTTGAAGTG GAGGGCAATA AGCATCAGGG TCAACTTAGC
  AGTCTCCAGC AATGCCAAAC CTGGTGATGC TCTGCTCTTC CCTCTGCACA TGCAGACCAT
  Y
  CCAGGAATGG GGATGAAAGC AGAAGAGAGA TTCAGAGGTT CTAAGGGTGG GCAGGGAAGT
  CACACACCCA CCTGTGATGG AAGATGAGGT GGCTGTGTTT CCCAGTAGAC CTCAGAGGGC
  CCAAGCTGCT AAGCTCTGAA TGTGGTTGGG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	BALB/cJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24737460	Fcamr_JC9043_2	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	T	C	T	C	C	T	T	C
ss319973479	CHEV_1_132697936	CHEVERUD	SCREENING_POP	f	SNP							T						T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	BALB/cJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16785814					SNP	C	C	C	C	C	C	T	C	T	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130729096 () rs orientation: forward

Symbol	Name	Function Class
Fcamr	Fc receptor, IgA, IgM, high affinity	within coordinates
Rr30371	regulatory region 30371	within coordinates
Rr30372	regulatory region 30372	1506 bp proximal
Tssr8570	transcription start site region 8570	719 bp downstream
Tssr8571	transcription start site region 8571	1723 bp upstream