rs16785816 SNP Detail

Summary

• ID
  rs16785816
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:130731189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTCACAC TCTGTCTGCT
  CCATGGTGAG TCCATAAACA GCCAGGCTTC AGAGACTGTG GGAGAGCTGG CAGTGGAACT
  CAGAACCAAC CAGGCAGGTC TACTGCCTTC TTTCCTGGGA TCCAACGTCA CTGCACCGTG
  GATCTGAGCT CTGGGAAATG AAGGCCATGA GAGCTTAGGG GAGACTGCAT GTGCCTAGCT
  Y
  AATGCTACCT AGAATAGTCA AGCACACACA CACACACACA CACACACACA CACACACACA
  CACACACACC ACCTAGGCCC CCACCTCCAC CCCTGCTCTC TGCCGCTTAA ATGGACGAGT
  GAAAGTTAGC CGTTTACAAT GTGTTCTAAG GTTCCAAGGA CTGCCAAACA CAAATGTTAC
  AGGCTTAGTG TCCGCTCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	DBA/2J	LP/J	PERA	SM/J	SPRET/EiJ
ss24737462	Fcamr_JC9045_1	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	DBA/2J	LP/J	PERA	SM/J	SPRET/EiJ
rs16785816					SNP	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130731189 () rs orientation: forward

Symbol	Name	Function Class
Fcamr	Fc receptor, IgA, IgM, high affinity	within coordinates
Rr30371	regulatory region 30371	990 bp distal
Rr30372	regulatory region 30372	within coordinates
Tssr8571	transcription start site region 8571	361 bp downstream