rs16785818 SNP Detail

Summary

• ID
  rs16785818
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:130731197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                           TTTNNTG GGATCAACGT CACTGCACCG TGGATCTGAG
  NTCTGGGAAA TGAAGGCCAT GAGAGCTTAG GGGAGACTGC ATGTGCCTAG CTNAATGNTA
  Y
  CTAGAATAGT CAAGcacaca cacacacaca cacacacaca cacacacaca cacCACCTAG
  GCCCCCACCT CCACCCCTGC TCTCTGCCGC TTAAATGGAC GAGNGAAAGT TAGCCGTTTA
  CAANGTGTTC TAAGGTTCCA AGGACTGCCA AACACAAATG TTACAGGCTT AGTGTCCGCT
  CCTTTGACAA ACACTTAAGC ACCAGNCCCA ACACTAACAA CATAAAAGTG GAGACCCTAT
  CCTACACATA AAGAAGTCAG TAAACAAAGG AATTACATGA TTAAAAATAT AACTGGTCAC
  TCACTTAATG GGTATTTATA NAGGGCTTAG TATGCATCAG GAGCTGAGGA CAATTCCATT
  AGCNATAGAA TCCACTCCTG GNAGTACTTG CACCCTGGCA TGCTGAGGCA CCCAGGTA  
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	PERA	SM/J	SPRET/EiJ
ss24737464	Fcamr_JC9045_3	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	PERA	SM/J	SPRET/EiJ
rs16785818					SNP	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130731197 () rs orientation: forward

Symbol	Name	Function Class
Fcamr	Fc receptor, IgA, IgM, high affinity	within coordinates
Tssr8571	transcription start site region 8571	369 bp downstream