rs16785819 SNP Detail

Summary

• ID
  rs16785819
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:130731309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                            T TTNNTGGGAT CAACGTCACT
  GCACCGTGGA TCTGAGNTCT GGGAAATGAA GGCCATGAGA GCTTAGGGGA GACTGCATGT
  GCCTAGCTNA ATGNTANCTA GAATAGTCAA Gcacacacac acacacacac acacacacac
  acacacacac CACCTAGGCC CCCACCTCCA CCCCTGCTCT CTGCCGCTTA AATGGACGAG
  W
  GAAAGTTAGC CGTTTACAAN GTGTTCTAAG GTTCCAAGGA CTGCCAAACA CAAATGTTAC
  AGGCTTAGTG TCCGCTCCTT TGACAAACAC TTAAGCACCA GNCCCAACAC TAACAACATA
  AAAGTGGAGA CCCTATCCTA CACATAAAGA AGTCAGTAAA CAAAGGAATT ACATGATTAA
  AAATATAACT GGTCACTCAC TTAATGGGTA TTTATANAGG GCTTAGTATG CATCAGGAGC
  TGAGGACAAT TCCATTAGCN ATAGAATCCA CTCCTGGNAG TACTTGCACC CTGGCATGCT
  GAGGCACCCA GGTA                                                  
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	FVB	PERA	SM/J	SPRET/EiJ
ss24737465	Fcamr_JC9045_4	ROCHEBIO	RPAMM	f	SNP	A	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	FVB	PERA	SM/J	SPRET/EiJ
rs16785819					SNP	A	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130731309 () rs orientation: forward

Symbol	Name	Function Class
Fcamr	Fc receptor, IgA, IgM, high affinity	within coordinates
Rr30371	regulatory region 30371	1110 bp distal
Rr30372	regulatory region 30372	within coordinates
Tssr8571	transcription start site region 8571	481 bp downstream