rs16785821 SNP Detail

Summary

• ID
  rs16785821
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:130731411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTAGGCCCC CACCTCCACC CCTGCTCTCT
  GCCGCTTAAA TGGACGAGTG AAAGTTAGCC GTTTACAATG TGTTCTAAGG TTCCAAGGAC
  TGCCAAACAC AAATGTTACA GGCTTAGTGT CCGCTCCTTT GACAAACACT TAAGCACCAG
  K
  CCCAACACTA ACAACATAAA AGTGGAGACC CTATCCTACA CATAAAGAAG TCAGTAAACA
  AAGGAATTAC ATGATTAAAA ATATAACTGG TCACTCACTT AATGGGTATT TATACAGGGC
  TTAGTATGCA TCAGGAGCTG AGGACAATTC                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	MRL/MpJ	NZW/LacJ	PERA	SM/J	SPRET/EiJ
ss24737467	Fcamr_JC9045_6	ROCHEBIO	RPAMM	f	SNP	G					G					G			T	G		T		T	T	G
ss49673258	NES12995378	PERLEGEN	MM_PANEL2	f	SNP		G	G	T	G		T	G	G	G		G	G			G		G
ss319973492	CHEV_1_132700251	CHEVERUD	SCREENING_POP	f	SNP														T						T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	MRL/MpJ	NZW/LacJ	PERA	SM/J	SPRET/EiJ
rs16785821					SNP	G	G	G	T	G	G	T	G	G	G	G	G	G	T	G	G	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49673258	NES12995378	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130731411 () rs orientation: forward

Symbol	Name	Function Class
Fcamr	Fc receptor, IgA, IgM, high affinity	within coordinates
Rr30371	regulatory region 30371	1212 bp distal
Rr30372	regulatory region 30372	within coordinates
Tssr8571	transcription start site region 8571	583 bp downstream