rs16785823 SNP Detail

Summary

• ID
  rs16785823
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:130731569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCTTAGT GTCCGCTCCT
  TTGACAAACA CTTAAGCACC AGGCCCAACA CTAACAACAT AAAAGTGGAG ACCCTATCCT
  ACACATAAAG AAGTCAGTAA ACAAAGGAAT TACATGATTA AAAATATAAC TGGTCACTCA
  CTTAATGGGT ATTTATACAG GGCTTAGTAT GCATCAGGAG CTGAGGACAA TTCCATTAGC
  R
  ATAGAATCCA GTCCTGGCAG TACTTGCAGC CTGGCATGCT GAGGCAGCCA GGTATAGACC
  AGGCAAGAGG GTAACGGATC CTTTCCTCAT GCAGTGGTGC CTACATTTTG TTATGATGGT
  AATGGGGAGC CACTGAAGAT TATAGTGTAT GTGGAGTGTC TATCAGTTAG ACTCTAGTCC
  AGGGACTTGT TCTACAAATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	BALB/cJ	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	PERA	SM/J	SPRET/EiJ
ss24737469	Fcamr_JC9045_8	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	BALB/cJ	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	PERA	SM/J	SPRET/EiJ
rs16785823					SNP	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130731569 () rs orientation: forward

Symbol	Name	Function Class
Fcamr	Fc receptor, IgA, IgM, high affinity	within coordinates
Rr30371	regulatory region 30371	1370 bp distal
Rr30372	regulatory region 30372	within coordinates
Tssr8571	transcription start site region 8571	741 bp downstream