rs16785995 SNP Detail

Summary

• ID
  rs16785995
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80636124 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AACTT TCAAGAACAT AGGACTCTAT
  R
  CCTGGCCTCT GCAGGGAGCC TGGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	BALB/cJ	C57BL/6J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss24737700	X83733_MC1125_16	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	BALB/cJ	C57BL/6J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs16785995					SNP	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80636124 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi1908	CpG island 1908	753 bp distal
Plekhj1	pleckstrin homology domain containing, family J member 1	1720 bp upstream
Rr435394	regulatory region 435394	1675 bp distal
Rr435395	regulatory region 435395	1548 bp distal
Rr435396	regulatory region 435396	799 bp distal
Sf3a2	splicing factor 3a, subunit 2	within coordinates
Tssr94608	transcription start site region 94608	1674 bp downstream
Tssr94609	transcription start site region 94609	1648 bp downstream
Tssr94610	transcription start site region 94610	1533 bp downstream
Tssr94611	transcription start site region 94611	1338 bp downstream
Tssr98512	transcription start site region 98512	1991 bp upstream
Tssr98513	transcription start site region 98513	1714 bp upstream
Tssr98514	transcription start site region 98514	1392 bp upstream