rs16787234 SNP Detail

Summary

• ID
  rs16787234
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19040192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAG GAAGGCAAAA TGGATTATTA
  Y
  TTAGTGAAGG AAAGAAGGTG AGAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA	PWD/PhJ	SM/J	SPRET/EiJ
ss24739099	Fosb_JC9058_4	ROCHEBIO	RPAMM	f	SNP	T			T		T				C	T			T	T		T		T	T		C		C	T
ss48162477	NES11838295	PERLEGEN	MM_PANEL2	f	SNP		T		T	T	T	T	T	T	C		T	T			T		T			T		T
ss148472563	ENSMUSSNP746643	ENSEMBL	ENSEMBL_Sanger	f	SNP			T							C
ss322116870	CHEV_7_19891616	CHEVERUD	SCREENING_POP	f	SNP														T										C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA	PWD/PhJ	SM/J	SPRET/EiJ
rs16787234					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48162477	NES11838295	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19040192 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18466	CpG island 18466	900 bp distal
Cpgi18467	CpG island 18467	1073 bp proximal
Cpgi18468	CpG island 18468	1993 bp proximal
Fosb	FBJ osteosarcoma oncogene B	within coordinates
Rr643087	regulatory region 643087	581 bp distal
Rr643088	regulatory region 643088	1919 bp proximal
Tssr2107	transcription start site region 2107	1148 bp downstream
Tssr64824	transcription start site region 64824	1956 bp downstream
Tssr64825	transcription start site region 64825	1468 bp downstream
Tssr64826	transcription start site region 64826	970 bp upstream
Tssr64827	transcription start site region 64827	1062 bp upstream
Tssr70898	transcription start site region 70898	1821 bp upstream
Tssr70899	transcription start site region 70899	1741 bp upstream
Tssr70900	transcription start site region 70900	926 bp downstream