rs16787235 SNP Detail

Summary

• ID
  rs16787235
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19040196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGATAGC TGGAGTAGCA
  GGTAAGGAAT TGACTTAGCA CAAAATAGTT TCCAGCCAGA GCCAGTCAGG ATGATGGCAT
  CTCAGCCAAG GGCTGAAACT TGAGGCTATC AAGTTGGGGG AGGAGGGCTG AACTACACAG
  GTAGATCCCC AGCTCAGGAA AAAAAAATGG AGGCAGGAAG GCAAAATGGA TTATTATTTA
  K
  TGAAGGAAAG AAGGTGAGAG AATTACCTCC TCTAGCTTGT CTCCTTAGGC TGAGAGAAAG
  CCAGGAGGGT GACATGTGGG GACATATTCA GGGAAAGTGG GGAACAGTCG AAAGTAAGTG
  GGCATGGGTC TGAGCATGCA TATGGAGCCA CTCCATCAGC CTATACTGAC CCCTGTTCCC
  TAAGAGGGGG TTTCCTCGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24739100	Fosb_JC9058_5	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16787235					SNP	G	G	G	G	G	G	G	G	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19040196 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18466	CpG island 18466	904 bp distal
Cpgi18467	CpG island 18467	1069 bp proximal
Cpgi18468	CpG island 18468	1989 bp proximal
Fosb	FBJ osteosarcoma oncogene B	within coordinates
Rr643087	regulatory region 643087	585 bp distal
Rr643088	regulatory region 643088	1915 bp proximal
Tssr2107	transcription start site region 2107	1144 bp downstream
Tssr64824	transcription start site region 64824	1960 bp downstream
Tssr64825	transcription start site region 64825	1472 bp downstream
Tssr64826	transcription start site region 64826	966 bp upstream
Tssr64827	transcription start site region 64827	1058 bp upstream
Tssr70898	transcription start site region 70898	1825 bp upstream
Tssr70899	transcription start site region 70899	1745 bp upstream
Tssr70900	transcription start site region 70900	922 bp downstream