rs16787237 SNP Detail

Summary

• ID
  rs16787237
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19040229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAA GGTGAGAGAA TTACCTCCTC
  Y
  AGCTTGTCTC CTTAGGCTGA GAGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA	PWD/PhJ	SM/J	SPRET/EiJ
ss24739102	Fosb_JC9058_7	ROCHEBIO	RPAMM	f	SNP	C		T					C	T			T	C		T	C	C		C		C	C
ss48162479	NES11838296	PERLEGEN	MM_PANEL2	f	SNP			T	T	T	C	C	C		T	C			C				C		C
ss148472569	ENSMUSSNP229308	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
ss322116871	CHEV_7_19891653	CHEVERUD	SCREENING_POP	f	SNP												T									C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA	PWD/PhJ	SM/J	SPRET/EiJ
rs16787237					SNP	C	C	T	T	T	C	C	C	T	T	C	T	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48162479	NES11838296	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19040229 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18466	CpG island 18466	937 bp distal
Cpgi18467	CpG island 18467	1036 bp proximal
Cpgi18468	CpG island 18468	1956 bp proximal
Fosb	FBJ osteosarcoma oncogene B	within coordinates
Rr643087	regulatory region 643087	618 bp distal
Rr643088	regulatory region 643088	1882 bp proximal
Tssr2107	transcription start site region 2107	1111 bp downstream
Tssr64824	transcription start site region 64824	1993 bp downstream
Tssr64825	transcription start site region 64825	1505 bp downstream
Tssr64826	transcription start site region 64826	933 bp upstream
Tssr64827	transcription start site region 64827	1025 bp upstream
Tssr70898	transcription start site region 70898	1858 bp upstream
Tssr70899	transcription start site region 70899	1778 bp upstream
Tssr70900	transcription start site region 70900	889 bp downstream