rs16787238 SNP Detail

Summary

• ID
  rs16787238
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19040350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAAAAAA AAATGGAGGC
  AGGAAGGCAA AATGGATTAT TATTTAGTGA AGGAAAGAAG GTGAGAGAAT TACCTCCTCT
  AGCTTGTCTC CTTAGGCTGA GAGAAAGCCA GGAGGGTGAC ATGTGGGGAC ATATTCAGGG
  AAAGTGGGGA ACAGTCGAAA GTAAGTGGGC ATGGGTCTGA GCATGCATAT GGAGCCACTC
  Y
  ATCAGCCTAT ACTGACCCCT GTTCCCTAAG AGGGGGTTTC CTCGTTTAGG ACACAGGCAC
  AGTGAGAAAC GGGGGAAGAA CAAGGCAGAG TGCTCCCAGC ACGGCCTCAA GACACCCCCA
  GACTCCTCCT TACCGCCTGA AGTCGATCTG TCAGCTCCCT CCGACGGTTC CTGCACTTAG
  CTGCAGCCAG CTTGTTCCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24739103	Fosb_JC9058_8	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16787238					SNP	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19040350 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18466	CpG island 18466	1058 bp distal
Cpgi18467	CpG island 18467	915 bp proximal
Cpgi18468	CpG island 18468	1835 bp proximal
Fosb	FBJ osteosarcoma oncogene B	within coordinates
Rr643087	regulatory region 643087	739 bp distal
Rr643088	regulatory region 643088	1761 bp proximal
Tssr2107	transcription start site region 2107	990 bp downstream
Tssr64825	transcription start site region 64825	1626 bp downstream
Tssr64826	transcription start site region 64826	812 bp upstream
Tssr64827	transcription start site region 64827	904 bp upstream
Tssr70898	transcription start site region 70898	1979 bp upstream
Tssr70899	transcription start site region 70899	1899 bp upstream
Tssr70900	transcription start site region 70900	768 bp downstream