rs16787239 SNP Detail

Summary

• ID
  rs16787239
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19040351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAAAAAA AATGGAGGCA
  GGAAGGCAAA ATGGATTATT ATTTAGTGAA GGAAAGAAGG TGAGAGAATT ACCTCCTCTA
  GCTTGTCTCC TTAGGCTGAG AGAAAGCCAG GAGGGTGACA TGTGGGGACA TATTCAGGGA
  AAGTGGGGAA CAGTCGAAAG TAAGTGGGCA TGGGTCTGAG CATGCATATG GAGCCACTCC
  R
  TCAGCCTATA CTGACCCCTG TTCCCTAAGA GGGGGTTTCC TCGTTTAGGA CACAGGCACA
  GTGAGAAACG GGGGAAGAAC AAGGCAGAGT GCTCCCAGCA CGGCCTCAAG ACACCCCCAG
  ACTCCTCCTT ACCGCCTGAA GTCGATCTGT CAGCTCCCTC CGACGGTTCC TGCACTTAGC
  TGCAGCCAGC TTGTTCCGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24739104	Fosb_JC9058_9	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16787239					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19040351 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18466	CpG island 18466	1059 bp distal
Cpgi18467	CpG island 18467	914 bp proximal
Cpgi18468	CpG island 18468	1834 bp proximal
Fosb	FBJ osteosarcoma oncogene B	within coordinates
Rr643087	regulatory region 643087	740 bp distal
Rr643088	regulatory region 643088	1760 bp proximal
Tssr2107	transcription start site region 2107	989 bp downstream
Tssr64825	transcription start site region 64825	1627 bp downstream
Tssr64826	transcription start site region 64826	811 bp upstream
Tssr64827	transcription start site region 64827	903 bp upstream
Tssr70898	transcription start site region 70898	1980 bp upstream
Tssr70899	transcription start site region 70899	1900 bp upstream
Tssr70900	transcription start site region 70900	767 bp downstream