rs16787240 SNP Detail

Summary

• ID
  rs16787240
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19040360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGGAGGC AGGAAGGCAA
  AATGGATTAT TATTTAGTGA AGGAAAGAAG GTGAGAGAAT TACCTCCTCT AGCTTGTCTC
  CTTAGGCTGA GAGAAAGCCA GGAGGGTGAC ATGTGGGGAC ATATTCAGGG AAAGTGGGGA
  ACAGTCGAAA GTAAGTGGGC ATGGGTCTGA GCATGCATAT GGAGCCACTC CATCAGCCTA
  Y
  ACTGACCCCT GTTCCCTAAG AGGGGGTTTC CTCGTTTAGG ACACAGGCAC AGTGAGAAAC
  GGGGGAAGAA CAAGGCAGAG TGCTCCCAGC ACGGCCTCAA GACACCCCCA GACTCCTCCT
  TACCGCCTGA AGTCGATCTG TCAGCTCCCT CCGACGGTTC CTGCACTTAG CTGCAGCCAG
  CTTGTTCCGC TCTCTGCGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	BALB/cJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24739105	Fosb_JC9058_10	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	BALB/cJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16787240					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19040360 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18466	CpG island 18466	1068 bp distal
Cpgi18467	CpG island 18467	905 bp proximal
Cpgi18468	CpG island 18468	1825 bp proximal
Fosb	FBJ osteosarcoma oncogene B	within coordinates
Rr643087	regulatory region 643087	749 bp distal
Rr643088	regulatory region 643088	1751 bp proximal
Tssr2107	transcription start site region 2107	980 bp downstream
Tssr64825	transcription start site region 64825	1636 bp downstream
Tssr64826	transcription start site region 64826	802 bp upstream
Tssr64827	transcription start site region 64827	894 bp upstream
Tssr70898	transcription start site region 70898	1989 bp upstream
Tssr70899	transcription start site region 70899	1909 bp upstream
Tssr70900	transcription start site region 70900	758 bp downstream