rs16787241 SNP Detail

Summary

• ID
  rs16787241
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19040421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCCTCTA GCTTGTCTCC
  TTAGGCTGAG AGAAAGCCAG GAGGGTGACA TGTGGGGACA TATTCAGGGA AAGTGGGGAA
  CAGTCGAAAG TAAGTGGGCA TGGGTCTGAG CATGCATATG GAGCCACTCC ATCAGCCTAT
  ACTGACCCCT GTTCCCTAAG AGGGGGTTTC CTCGTTTAGG ACACAGGCAC AGTGAGAAAC
  R
  GGGGAAGAAC AAGGCAGAGT GCTCCCAGCA CGGCCTCAAG ACACCCCCAG ACTCCTCCTT
  ACCGCCTGAA GTCGATCTGT CAGCTCCCTC CGACGGTTCC TGCACTTAGC TGCAGCCAGC
  TTGTTCCGCT CTCTGCGAAC CCTTCGCTTT TCTTCTTCTT CTGGGGTAAG CTGAGTCAGA
  GATAAGGACC ATGAGATCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24739106	Fosb_JC9058_11	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16787241					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19040421 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18466	CpG island 18466	1129 bp distal
Cpgi18467	CpG island 18467	844 bp proximal
Cpgi18468	CpG island 18468	1764 bp proximal
Fosb	FBJ osteosarcoma oncogene B	within coordinates
Rr400143	regulatory region 400143	1947 bp upstream
Rr643087	regulatory region 643087	810 bp distal
Rr643088	regulatory region 643088	1690 bp proximal
Tssr2107	transcription start site region 2107	919 bp downstream
Tssr64825	transcription start site region 64825	1697 bp downstream
Tssr64826	transcription start site region 64826	741 bp upstream
Tssr64827	transcription start site region 64827	833 bp upstream
Tssr70899	transcription start site region 70899	1970 bp upstream
Tssr70900	transcription start site region 70900	697 bp downstream