rs16787242 SNP Detail

Summary

• ID
  rs16787242
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19040496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAACAGTC GAAAGTAAGT
  GGGCATGGGT CTGAGCATGC ATATGGAGCC ACTCCATCAG CCTATACTGA CCCCTGTTCC
  CTAAGAGGGG GTTTCCTCGT TTAGGACACA GGCACAGTGA GAAACGGGGG AAGAACAAGG
  CAGAGTGCTC CCAGCACGGC CTCAAGACAC CCCCAGACTC CTCCTTACCG CCTGAAGTCG
  R
  TCTGTCAGCT CCCTCCGACG GTTCCTGCAC TTAGCTGCAG CCAGCTTGTT CCGCTCTCTG
  CGAACCCTTC GCTTTTCTTC TTCTTCTGGG GTAAGCTGAG TCAGAGATAA GGACCATGAG
  ATCTGGGGGT ACCTCTATCA GCCCTAAGAA AACTCCTTCC TCCTGAACCC CAAATAATAA
  CCCCTACTCC TCACTGGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss24739107	Fosb_JC9058_12	ROCHEBIO	RPAMM	f	SNP	G			A			A			A	A			A	G		A		G	G		A		A	G
ss48162481	NES11838297	PERLEGEN	MM_PANEL2	f	SNP		G		A	A	A		G	A	A		A	G			G		G			G		G			A
ss148472573	ENSMUSSNP107649	ENSEMBL	ENSEMBL_Sanger	f	SNP			G	A						A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs16787242					SNP	G	G	G	A	A	A	A	G	A	A	A	A	G	A	G	G	A	G	G	G	G	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48162481	NES11838297	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19040496 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18466	CpG island 18466	1204 bp distal
Cpgi18467	CpG island 18467	769 bp proximal
Cpgi18468	CpG island 18468	1689 bp proximal
Fosb	FBJ osteosarcoma oncogene B	within coordinates
Rr400143	regulatory region 400143	1872 bp upstream
Rr643087	regulatory region 643087	885 bp distal
Rr643088	regulatory region 643088	1615 bp proximal
Tssr2107	transcription start site region 2107	844 bp downstream
Tssr64825	transcription start site region 64825	1772 bp downstream
Tssr64826	transcription start site region 64826	666 bp upstream
Tssr64827	transcription start site region 64827	758 bp upstream
Tssr70900	transcription start site region 70900	622 bp downstream