rs16787244 SNP Detail

Summary

• ID
  rs16787244
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:19040848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCCTTCCT CCTGAACCCC
  AAATAATAAC CCCTACTCCT CACTGGCCAG AATGGTAAAG TTCCTTCAGA CTTGAGGCCT
  CAGAGGAACC TCCAACTATT AAGTGACAAA ATTACTGTCA CTTTCTCTTA CTTCCCTCAC
  CCACCTCCCC CCAAGGCCAA CTTTTGAAAA TAATGATCTC TTGCAGTGCA GGCTGGACTC
  S
  ATAAGTAGCA CAGGCTGGCC TCGAACTCCT GCTCCTCCTG CCTCCACCTT CTGAGAGCTG
  GGGTTACAGG TCTGCATAAC CACTCCTGGC TTATGCTGTG CTAGGGATCT TCATGCATGG
  CAGCAAGCAC TGTACAAACT GAGCCCACAT CCCTAGCTAG GCTCCTCCAT CCCAACTCCT
  GAGGCCTCAT ACTTACTGTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24739109	Fosb_JC9059_3	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16787244					SNP	C	C	C	C	C	C	C	C	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19040848 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18466	CpG island 18466	1556 bp distal
Cpgi18467	CpG island 18467	417 bp proximal
Cpgi18468	CpG island 18468	1337 bp proximal
Fosb	FBJ osteosarcoma oncogene B	Intron
Rr400143	regulatory region 400143	1520 bp upstream
Rr643087	regulatory region 643087	1237 bp distal
Rr643088	regulatory region 643088	1263 bp proximal
Tssr2107	transcription start site region 2107	492 bp downstream
Tssr64826	transcription start site region 64826	314 bp upstream
Tssr64827	transcription start site region 64827	406 bp upstream
Tssr70900	transcription start site region 70900	270 bp downstream