rs16787245 SNP Detail

Summary

• ID
  rs16787245
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19040885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCACTGGC CAGAATGGTA
  AAGTTCCTTC AGACTTGAGG CCTCAGAGGA ACCTCCAACT ATTAAGTGAC AAAATTACTG
  TCACTTTCTC TTACTTCCCT CACCCACCTC CCCCCAAGGC CAACTTTTGA AAATAATGAT
  CTCTTGCAGT GCAGGCTGGA CTCCATAAGT AGCACAGGCT GGCCTCGAAC TCCTGCTCCT
  Y
  CTGCCTCCAC CTTCTGAGAG CTGGGGTTAC AGGTCTGCAT AACCACTCCT GGCTTATGCT
  GTGCTAGGGA TCTTCATGCA TGGCAGCAAG CACTGTACAA ACTGAGCCCA CATCCCTAGC
  TAGGCTCCTC CATCCCAACT CCTGAGGCCT CATACTTACT GTCTCTTCTC GGGGTCTTCT
  AGGCCTGGCT CTGGCTGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24739110	Fosb_JC9059_4	ROCHEBIO	RPAMM	f	SNP	T	C	C	C	C	C	T	C	T	T	C	C	C
ss148472579	ENSMUSSNP4203012	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16787245					SNP	T	C	C	C	C	C	T	C	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19040885 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18466	CpG island 18466	1593 bp distal
Cpgi18467	CpG island 18467	380 bp proximal
Cpgi18468	CpG island 18468	1300 bp proximal
Fosb	FBJ osteosarcoma oncogene B	within coordinates
Rr400143	regulatory region 400143	1483 bp upstream
Rr643087	regulatory region 643087	1274 bp distal
Rr643088	regulatory region 643088	1226 bp proximal
Tssr2107	transcription start site region 2107	455 bp downstream
Tssr64826	transcription start site region 64826	277 bp upstream
Tssr64827	transcription start site region 64827	369 bp upstream
Tssr70900	transcription start site region 70900	233 bp downstream