rs16787247 SNP Detail

Summary

• ID
  rs16787247
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:19041138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTATGCTGT GCTAGGGATC
  TTCATGCATG GCAGCAAGCA CTGTACAAAC TGAGCCCACA TCCCTAGCTA GGCTCCTCCA
  TCCCAACTCC TGAGGCCTCA TACTTACTGT CTCTTCTCGG GGTCTTCTAG GCCTGGCTCT
  GGCTGGACGG GCAGACACAG GTCCACTGGT GGTTGTGCTG GTTGAAGGCC CACCACTTCC
  R
  CTTGCCCCGC CAGTGCTGTA GGCACTCAGG CCTGGGGTTG AGTAGCTGGT TCCTGGCATG
  TCATAAGGGT CAACAGCTGG AGGCTGGGAG GCCAGTGGCT GCCCCTGGGA CTGGGCCATG
  GAAGAGATGA GGGTGGGTTG CACGAGCCAC TGAAGATCCT GGCTGGTTGT GATTGCGGTG
  ACCGTTGGCA CGAAGGAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/J	BALB/cJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	PERA	SM/J	SPRET/EiJ
ss24739112	Fosb_JC9059_6	ROCHEBIO	RPAMM	f	SNP	A		G	G	G	G	G	A	G	A	G	G	G
ss46116562	mCV25049446	ABI	CRAMUS_MOUSE	f	SNP		A	G		G
ss148472583	ENSMUSSNP6751530	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/J	BALB/cJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	PERA	SM/J	SPRET/EiJ
rs16787247					SNP	A	A	G	G	G	G	G	A	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19041138 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18466	CpG island 18466	1846 bp distal
Cpgi18467	CpG island 18467	127 bp proximal
Cpgi18468	CpG island 18468	1047 bp proximal
Fosb	FBJ osteosarcoma oncogene B	Coding-Synonymous
Rr400143	regulatory region 400143	1230 bp upstream
Rr643087	regulatory region 643087	1527 bp distal
Rr643088	regulatory region 643088	973 bp proximal
Tssr2107	transcription start site region 2107	202 bp downstream
Tssr64826	transcription start site region 64826	24 bp upstream
Tssr64827	transcription start site region 64827	116 bp upstream
Tssr70900	transcription start site region 70900	9 bp upstream