rs16788474 SNP Detail

Summary

• ID
  rs16788474
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107972433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCATCTA CTGCAAGCCA
  GGCGATTAGG AGTGGGAAAC TTAGGTTCCC GGGTGGAGCC CTGGGGCGCC GGGCAAAGGG
  CGGTGCTGAA CTCTCTGGGT GCTACCCTGG CTTATCAATC ACCAGACTTG CCCCTAAAGC
  TATCTGTTGC CACAGCCTTA ACCCGCCCTT CTCAGAAGCT CCTTGCTGCG GATCGTGAGC
  M
  GACTGGGTCT CAACCTACTC CAAGGGCCGA TGTGGAGGGT CAGACTTCAC CTAAGAGCAG
  CGAGCGTGCT GTGGAAAGAA GAGCCTAGGC AGACAGTCTC CTGCACACGA CACAGGACTA
  GGTTGACTTA GGTGACAGCA GAGAGCAAGA GTGGTTGGGC AACAGTAGGT ATCTCCCCCT
  CCTCCATATA GCTTGAGAGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24740686	apeh_AP53_3	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	A	C	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16788474					SNP	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	A	C	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107972433 () rs orientation: forward

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	697 bp upstream
Bsn	bassoon	788 bp downstream
Cpgi22322	CpG island 22322	within coordinates
Gm57046	predicted gene, 57046	within coordinates
Rr401675	regulatory region 401675	512 bp downstream
Rr686707	regulatory region 686707	938 bp distal
Rr686708	regulatory region 686708	641 bp distal
Rr686709	regulatory region 686709	17 bp distal
Rr686710	regulatory region 686710	522 bp proximal
Rr686711	regulatory region 686711	1046 bp proximal
Rr686712	regulatory region 686712	1268 bp proximal
Tssr87065	transcription start site region 87065	538 bp downstream
Tssr87066	transcription start site region 87066	21 bp downstream
Tssr87067	transcription start site region 87067	3 bp upstream
Tssr91491	transcription start site region 91491	747 bp upstream
Tssr91492	transcription start site region 91492	692 bp upstream