rs16788475 SNP Detail

Summary

• ID
  rs16788475
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107972442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCAAGCC AGGCGATTAG
  GAGTGGGAAA CTTAGGTTCC CGGGTGGAGC CCTGGGGCGC CGGGCAAAGG GCGGTGCTGA
  ACTCTCTGGG TGCTACCCTG GCTTATCAAT CACCAGACTT GCCCCTAAAG CTATCTGTTG
  CCACAGCCTT AACCCGCCCT TCTCAGAAGC TCCTTGCTGC GGATCGTGAG CCGACTGGGT
  Y
  TCAACCTACT CCAAGGGCCG ATGTGGAGGG TCAGACTTCA CCTAAGAGCA GCGAGCGTGC
  TGTGGAAAGA AGAGCCTAGG CAGACAGTCT CCTGCACACG ACACAGGACT AGGTTGACTT
  AGGTGACAGC AGAGAGCAAG AGTGGTTGGG CAACAGTAGG TATCTCCCCC TCCTCCATAT
  AGCTTGAGAG TGGCTGGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24740687	apeh_AP53_4	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16788475					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107972442 () rs orientation: forward

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	706 bp upstream
Bsn	bassoon	779 bp downstream
Cpgi22322	CpG island 22322	within coordinates
Gm57046	predicted gene, 57046	within coordinates
Rr401675	regulatory region 401675	521 bp downstream
Rr686707	regulatory region 686707	947 bp distal
Rr686708	regulatory region 686708	650 bp distal
Rr686709	regulatory region 686709	26 bp distal
Rr686710	regulatory region 686710	513 bp proximal
Rr686711	regulatory region 686711	1037 bp proximal
Rr686712	regulatory region 686712	1259 bp proximal
Tssr87065	transcription start site region 87065	547 bp downstream
Tssr87066	transcription start site region 87066	30 bp downstream
Tssr87067	transcription start site region 87067	within coordinates
Tssr91491	transcription start site region 91491	756 bp upstream
Tssr91492	transcription start site region 91492	701 bp upstream