rs16788476 SNP Detail

Summary

• ID
  rs16788476
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107972525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGGGTGC TACCCTGGCT
  TATCAATCAC CAGACTTGCC CCTAAAGCTA TCTGTTGCCA CAGCCTTAAC CCGCCCTTCT
  CAGAAGCTCC TTGCTGCGGA TCGTGAGCCG ACTGGGTCTC AACCTACTCC AAGGGCCGAT
  GTGGAGGGTC AGACTTCACC TAAGAGCAGC GAGCGTGCTG TGGAAAGAAG AGCCTAGGCA
  K
  ACAGTCTCCT GCACACGACA CAGGACTAGG TTGACTTAGG TGACAGCAGA GAGCAAGAGT
  GGTTGGGCAA CAGTAGGTAT CTCCCCCTCC TCCATATAGC TTGAGAGTGG CTGGTCTTTT
  AGACCAGCTA TGGGCCCCCT TGAATGAGTG CTTTCTTTCT TACTTGAGGC AAAATTGATA
  CTCTTTAATC TCTGTTTCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24740688	apeh_AP53_5	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16788476					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107972525 () rs orientation: forward

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	789 bp upstream
Bsn	bassoon	696 bp downstream
Cpgi22322	CpG island 22322	78 bp distal
Gm57046	predicted gene, 57046	within coordinates
Rr401675	regulatory region 401675	604 bp downstream
Rr686707	regulatory region 686707	1030 bp distal
Rr686708	regulatory region 686708	733 bp distal
Rr686709	regulatory region 686709	109 bp distal
Rr686710	regulatory region 686710	430 bp proximal
Rr686711	regulatory region 686711	954 bp proximal
Rr686712	regulatory region 686712	1176 bp proximal
Tssr87065	transcription start site region 87065	630 bp downstream
Tssr87066	transcription start site region 87066	113 bp downstream
Tssr87067	transcription start site region 87067	75 bp downstream
Tssr91491	transcription start site region 91491	839 bp upstream
Tssr91492	transcription start site region 91492	784 bp upstream