rs16788477 SNP Detail

Summary

• ID
  rs16788477
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107972658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GNGNCCTGGG
  GCGCCGGGCA AAGGGCGGTG CTGAACTCTC TGGGTGCTAC CCTGGCTTAT CAATNACCAG
  ACTTGCCCCT AAAGCTATCT GTTGCCACAG CCTTAACCCG CCCTTCTCAG ANGCTCCTTG
  CTGCGGATCG TGAGCNGACT GGGTNTCAAC CTACTCCAAG GGCCGATGTG GAGGGTCAGA
  CTTCACCTAA GAGCAGCGAG CGTGCTGTGG AAAGAAGAGC CTAGGCANAC AGTCTCCTGC
  ACACGACACA GGACTAGGTT GACTTAGGTG ACAGCAGAGA GCAAGAGTGG TTGGGCAACA
  GTAGGTATCT CCCCCTCCTC CATATAGCTT GAGAGTGGCT GGTCTTTTAG ACCAGCTATG
  R
  GNCCCCTTGA ATGAGTGCTT TCTTTCTTAC TTGAGGCAAA ATTGATACTC TTTNATCTCT
  GTTTCTTATT TTCTAGTGCT GCTTAACTTA TATTTGTTTA gtttctctac ntagtnctgg
  cctcaaactc acagagaccc acctatctct gtctcccaag agctgggatt aaatgtgtgg
  gctatgatat ccag                                                  
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24740689	apeh_AP53_6	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16788477					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107972658 () rs orientation: forward

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	922 bp upstream
Bsn	bassoon	563 bp downstream
Cpgi22322	CpG island 22322	211 bp distal
Gm57046	predicted gene, 57046	within coordinates
Rr401675	regulatory region 401675	737 bp downstream
Rr686707	regulatory region 686707	1163 bp distal
Rr686708	regulatory region 686708	866 bp distal
Rr686709	regulatory region 686709	242 bp distal
Rr686710	regulatory region 686710	297 bp proximal
Rr686711	regulatory region 686711	821 bp proximal
Rr686712	regulatory region 686712	1043 bp proximal
Tssr87065	transcription start site region 87065	763 bp downstream
Tssr87066	transcription start site region 87066	246 bp downstream
Tssr87067	transcription start site region 87067	208 bp downstream
Tssr91491	transcription start site region 91491	972 bp upstream
Tssr91492	transcription start site region 91492	917 bp upstream