rs16788478 SNP Detail

Summary

• ID
  rs16788478
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107972660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGATGTGGA GGGTCAGACT
  TCACCTAAGA GCAGCGAGCG TGCTGTGGAA AGAAGAGCCT AGGCAGACAG TCTCCTGCAC
  ACGACACAGG ACTAGGTTGA CTTAGGTGAC AGCAGAGAGC AAGAGTGGTT GGGCAACAGT
  AGGTATCTCC CCCTCCTCCA TATAGCTTGA GAGTGGCTGG TCTTTTAGAC CAGCTATGGG
  Y
  CCCCTTGAAT GAGTGCTTTC TTTCTTACTT GAGGCAAAAT TGATACTCTT TAATCTCTGT
  TTCTTATTTT CTAGTGCTGC TTAACTTATA TTTGTTTAGT TTCTCTACGT AGTTCTGGCC
  TCAAACTCAC AGAGACCCAC CTATCTCTGT CTCCCAAGAG CTGGGATTAA ATGTGTGGGC
  TATGATATCC AGCTTGAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24740690	apeh_AP53_7	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16788478					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107972660 () rs orientation: forward

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	924 bp upstream
Bsn	bassoon	561 bp downstream
Cpgi22322	CpG island 22322	213 bp distal
Gm57046	predicted gene, 57046	within coordinates
Rr401675	regulatory region 401675	739 bp downstream
Rr686707	regulatory region 686707	1165 bp distal
Rr686708	regulatory region 686708	868 bp distal
Rr686709	regulatory region 686709	244 bp distal
Rr686710	regulatory region 686710	295 bp proximal
Rr686711	regulatory region 686711	819 bp proximal
Rr686712	regulatory region 686712	1041 bp proximal
Tssr87065	transcription start site region 87065	765 bp downstream
Tssr87066	transcription start site region 87066	248 bp downstream
Tssr87067	transcription start site region 87067	210 bp downstream
Tssr91491	transcription start site region 91491	974 bp upstream
Tssr91492	transcription start site region 91492	919 bp upstream