rs16788479 SNP Detail

Summary

• ID
  rs16788479
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107972712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGCCTAG GCAGACAGTC
  TCCTGCACAC GACACAGGAC TAGGTTGACT TAGGTGACAG CAGAGAGCAA GAGTGGTTGG
  GCAACAGTAG GTATCTCCCC CTCCTCCATA TAGCTTGAGA GTGGCTGGTC TTTTAGACCA
  GCTATGGGCC CCCTTGAATG AGTGCTTTCT TTCTTACTTG AGGCAAAATT GATACTCTTT
  M
  ATCTCTGTTT CTTATTTTCT AGTGCTGCTT AACTTATATT TGTTTAGTTT CTCTACGTAG
  TTCTGGCCTC AAACTCACAG AGACCCACCT ATCTCTGTCT CCCAAGAGCT GGGATTAAAT
  GTGTGGGCTA TGATATCCAG CTTGAACTAT TCTTGACTAT ACTAAGGATT AAAGTCTCAG
  CCATGGGGGA CTGGGGGGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24740691	apeh_AP53_8	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16788479					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107972712 () rs orientation: forward

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	976 bp upstream
Bsn	bassoon	509 bp downstream
Cpgi22322	CpG island 22322	265 bp distal
Gm57046	predicted gene, 57046	within coordinates
Rr401675	regulatory region 401675	791 bp downstream
Rr686707	regulatory region 686707	1217 bp distal
Rr686708	regulatory region 686708	920 bp distal
Rr686709	regulatory region 686709	296 bp distal
Rr686710	regulatory region 686710	243 bp proximal
Rr686711	regulatory region 686711	767 bp proximal
Rr686712	regulatory region 686712	989 bp proximal
Tssr87065	transcription start site region 87065	817 bp downstream
Tssr87066	transcription start site region 87066	300 bp downstream
Tssr87067	transcription start site region 87067	262 bp downstream
Tssr91491	transcription start site region 91491	1026 bp upstream
Tssr91492	transcription start site region 91492	971 bp upstream