rs16788482 SNP Detail

Summary

• ID
  rs16788482
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107973150 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                GGG
  GGCCCTTTAC ATTTTTTCCC CCNAGGTTTT ATGTCTNGNT TTTGCTTTCC CTCCCCTCCT
  CCTCCCCTCT CTCTCCTTCT CTCTGTGAGG GGGGAGAGTG CTGTACAAAG TNANACAAAC
  AAGTTTACAT TGTAAGTGCA ATGACCCGAG TCCTCCACAT GACCTTGTGA ATTGTGTGCC
  GTCCTCCTGT GCTCTGTGAG AACTCGNGGT ACTTCAGTGT CCCTCCCCTG TACTGTGACA
  AGGTATTTCT GTGGTATCAG AATAAAAGGA CTTGATATAA ACAACCTTCA GACAGTCTNG
  GGGTGATTTN TGAAGTGGGA ACACTTAGCC AAACAGGTAG ATGCCAACGT TTGTGACAGT
  W
  TTNTCCACGA TTAAAGAAAA AAATGAGAAA GAGCAAAATT TCAGAAATGT TGGCACAATT
  GAGGNNGNGT NAACACCAAG CCNTTCAAAC ATGACCCTCC AGGAANGTGC AAAGGCNTGT
  CCTAAGCCNC CAGACAGTTT TCAGGATCCT GGTTCCCAGG AGCTAGATGG GCAAGTGCTG
  CCCCCTGGTG CTNTCAAACA AGCTTTACAT CTGCCTACCT TGTTCGAACC TCCCCCCCCC
  CCCCCCCAGN CCCC                                                  
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SPRET/EiJ
ss24740694	apeh_AP54_1	ROCHEBIO	RPAMM	f	SNP			A		A				A	A	A	A	A	A	T	A	A	A
ss24740714	apeh_AP55_11	ROCHEBIO	RPAMM	r	SNP	T	A		T		A	T	T	T									T
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SPRET/EiJ
rs16788482					SNP	A	T	A	A	A	T	A	A	A	A	A	A	A	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107973150 () rs orientation: reverse

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	1414 bp upstream
Bsn	bassoon	71 bp downstream
Cpgi22322	CpG island 22322	703 bp distal
Gm57046	predicted gene, 57046	within coordinates
Rr401675	regulatory region 401675	1229 bp downstream
Rr686707	regulatory region 686707	1655 bp distal
Rr686708	regulatory region 686708	1358 bp distal
Rr686709	regulatory region 686709	734 bp distal
Rr686710	regulatory region 686710	174 bp distal
Rr686711	regulatory region 686711	329 bp proximal
Rr686712	regulatory region 686712	551 bp proximal
Tssr87065	transcription start site region 87065	1255 bp downstream
Tssr87066	transcription start site region 87066	738 bp downstream
Tssr87067	transcription start site region 87067	700 bp downstream
Tssr91491	transcription start site region 91491	1464 bp upstream
Tssr91492	transcription start site region 91492	1409 bp upstream