rs16788483 SNP Detail

Summary

• ID
  rs16788483
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107973112 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                       TTCTTT TTTTTTGTGG GGGGGGGGAG
  TGTTGTNNAA ATTAAAACAA AAAAGTTTAC NTTGTAAGTG CAATGACCCG AGTCCTCCAC
  ATGACCTTGT GAATTGTGTG CCGTCCTCCT GTGCTCTGTG AGAACTCGTG GTACTTCAGT
  GTCCCTCCCC TGTACTGTGA CAAGGTATTT CTGTGGTATC AGAATAAAAG GACTTGATAT
  AAACAACCTT CAGACAGTCT NGGGGTGATT TCTGAAGTGG GAACACTTAG CCAAACAGGT
  AGATGCCAAC GTTTGTGACA GTNTTNTCCN CGATTAAAGA AAAAAATGAG AAAGAGCAAA
  W
  TTTNAGAAAT GTTGGCACAA TTGAGGNNGA GTNAACACCA AGCCNTTCAA ACATGACCCT
  CCAGGAANGT GCAAAGGCNT GTCCTAAGCC ACCAGACAGT TTTCAGGATC CTGGTTCCCA
  GGAGCTAGAT GGGCAAGTGC TGCCCCCTGG TGCTNTNAAA CAAGCTTTAC ATCTGCCTAC
  CTTGTTCGAA ACTCCCCCCC CCCCCCCAGT CCCCCATGGG TGAGACTTTA ATCCTT    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24740695	apeh_AP54_2	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16788483					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107973112 () rs orientation: reverse

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	1376 bp upstream
Bsn	bassoon	109 bp downstream
Cpgi22322	CpG island 22322	665 bp distal
Gm57046	predicted gene, 57046	within coordinates
Rr401675	regulatory region 401675	1191 bp downstream
Rr686707	regulatory region 686707	1617 bp distal
Rr686708	regulatory region 686708	1320 bp distal
Rr686709	regulatory region 686709	696 bp distal
Rr686710	regulatory region 686710	136 bp distal
Rr686711	regulatory region 686711	367 bp proximal
Rr686712	regulatory region 686712	589 bp proximal
Tssr87065	transcription start site region 87065	1217 bp downstream
Tssr87066	transcription start site region 87066	700 bp downstream
Tssr87067	transcription start site region 87067	662 bp downstream
Tssr91491	transcription start site region 91491	1426 bp upstream
Tssr91492	transcription start site region 91492	1371 bp upstream