rs16788484 SNP Detail

Summary

• ID
  rs16788484
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107973108 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                   TTCTTTTTTT TTGTGGGGGG GGGGAGTGTT
  GTNNAAATTA AAACAAAAAA GTTTACNTTG TAAGTGCAAT GACCCGAGTC CTCCACATGA
  CCTTGTGAAT TGTGTGCCGT CCTCCTGTGC TCTGTGAGAA CTCGTGGTAC TTCAGTGTCC
  CTCCCCTGTA CTGTGACAAG GTATTTCTGT GGTATCAGAA TAAAAGGACT TGATATAAAC
  AACCTTCAGA CAGTCTNGGG GTGATTTCTG AAGTGGGAAC ACTTAGCCAA ACAGGTAGAT
  GCCAACGTTT GTGACAGTNT TNTCCNCGAT TAAAGAAAAA AATGAGAAAG AGCAAANTTT
  Y
  AGAAATGTTG GCACAATTGA GGNNGAGTNA ACACCAAGCC NTTCAAACAT GACCCTCCAG
  GAANGTGCAA AGGCNTGTCC TAAGCCACCA GACAGTTTTC AGGATCCTGG TTCCCAGGAG
  CTAGATGGGC AAGTGCTGCC CCCTGGTGCT NTNAAACAAG CTTTACATCT GCCTACCTTG
  TTCGAAACTC CCCCCCCCCC CCCAGTCCCC CATGGGTGAG ACTTTAATCC TT        
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	LG/J	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24740696	apeh_AP54_3	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	LG/J	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16788484					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107973108 () rs orientation: reverse

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	1372 bp upstream
Bsn	bassoon	113 bp downstream
Cpgi22322	CpG island 22322	661 bp distal
Gm57046	predicted gene, 57046	within coordinates
Rr401675	regulatory region 401675	1187 bp downstream
Rr686707	regulatory region 686707	1613 bp distal
Rr686708	regulatory region 686708	1316 bp distal
Rr686709	regulatory region 686709	692 bp distal
Rr686710	regulatory region 686710	132 bp distal
Rr686711	regulatory region 686711	371 bp proximal
Rr686712	regulatory region 686712	593 bp proximal
Tssr87065	transcription start site region 87065	1213 bp downstream
Tssr87066	transcription start site region 87066	696 bp downstream
Tssr87067	transcription start site region 87067	658 bp downstream
Tssr91491	transcription start site region 91491	1422 bp upstream
Tssr91492	transcription start site region 91492	1367 bp upstream