rs16788487 SNP Detail

Summary

• ID
  rs16788487
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107973067 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                       GGGGGC CCTTTACATT TTTTCCCCCN
  AGGTTTTATG TCTNGNTTTT GCTTTCCCTC CCCTCCTCCT CCCCTCTCTC TCCTTCTCTC
  TGTGAGGGGG GAGAGTGCTG TACAAAGTNA NACAAACAAG TTTACATTGT AAGTGCAATG
  ACCCGAGTCC TCCACATGAC CTTGTGAATT GTGTGCCGTC CTCCTGTGCT CTGTGAGAAC
  TCGNGGTACT TCAGTGTCCC TCCCCTGTAC TGTGACAAGG TATTTCTGTG GTATCAGAAT
  AAAAGGACTT GATATAAACA ACCTTCAGAC AGTCTNGGGG TGATTTNTGA AGTGGGAACA
  CTTAGCCAAA CAGGTAGATG CCAACGTTTG TGACAGTNTT NTCCACGATT AAAGAAAAAA
  ATGAGAAAGA GCAAAATTTC AGAAATGTTG GCACAATTGA GGNNGNGTNA ACACCAAGCC
  H
  TTCAAACATG ACCCTCCAGG AANGTGCAAA GGCNTGTCCT AAGCCNCCAG ACAGTTTTCA
  GGATCCTGGT TCCCAGGAGC TAGATGGGCA AGTGCTGCCC CCTGGTGCTN TCAAACAAGC
  TTTACATCTG CCTACCTTGT TCGAACCTCC CCCCCCCCCC CCCCAGNCCC C         
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24740699	apeh_AP54_6	ROCHEBIO	RPAMM	f	SNP	A		A	A	A		A		A	A	A	A	A	A	T	A	A	A	A
ss24740708	apeh_AP55_5	ROCHEBIO	RPAMM	r	SNP	T	T				G	T	T	T			T	T	T		T	T		T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16788487					SNP	A	A	A	A	A	C	A	A	A	A	A	A	A	A	T	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107973067 () rs orientation: reverse

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	1331 bp upstream
Bsn	bassoon	154 bp downstream
Cpgi22322	CpG island 22322	620 bp distal
Gm57046	predicted gene, 57046	within coordinates
Rr401675	regulatory region 401675	1146 bp downstream
Rr686707	regulatory region 686707	1572 bp distal
Rr686708	regulatory region 686708	1275 bp distal
Rr686709	regulatory region 686709	651 bp distal
Rr686710	regulatory region 686710	91 bp distal
Rr686711	regulatory region 686711	412 bp proximal
Rr686712	regulatory region 686712	634 bp proximal
Tssr87065	transcription start site region 87065	1172 bp downstream
Tssr87066	transcription start site region 87066	655 bp downstream
Tssr87067	transcription start site region 87067	617 bp downstream
Tssr91491	transcription start site region 91491	1381 bp upstream
Tssr91492	transcription start site region 91492	1326 bp upstream