rs16788488 SNP Detail

Summary

• ID
  rs16788488
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107973044 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CCATT CAAACATGAC CCTCCAGGAA
  R
  GTGCAAAGGC TTGTCCTAAG CCACC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24740700	apeh_AP54_7	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	A		G	A	G	G
ss24740707	apeh_AP55_4	ROCHEBIO	RPAMM	r	SNP	C	C		C	C	C	C	C	C	C	C	C	T	C	T	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16788488					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	A	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107973044 () rs orientation: reverse

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	1308 bp upstream
Bsn	bassoon	177 bp downstream
Cpgi22322	CpG island 22322	597 bp distal
Gm57046	predicted gene, 57046	within coordinates
Rr401675	regulatory region 401675	1123 bp downstream
Rr686707	regulatory region 686707	1549 bp distal
Rr686708	regulatory region 686708	1252 bp distal
Rr686709	regulatory region 686709	628 bp distal
Rr686710	regulatory region 686710	68 bp distal
Rr686711	regulatory region 686711	435 bp proximal
Rr686712	regulatory region 686712	657 bp proximal
Tssr87065	transcription start site region 87065	1149 bp downstream
Tssr87066	transcription start site region 87066	632 bp downstream
Tssr87067	transcription start site region 87067	594 bp downstream
Tssr91491	transcription start site region 91491	1358 bp upstream
Tssr91492	transcription start site region 91492	1303 bp upstream