rs16788489 SNP Detail

Summary

• ID
  rs16788489
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107973033 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGACC CTCCAGGAAG GTGCAAAGGC
  Y
  TGTCCTAAGC CACCAGACAG TTTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24740701	apeh_AP54_8	ROCHEBIO	RPAMM	f	SNP	C		T	T	T	T	T		T	T	T	C	T	T	T	C	C	T	C		T	C	T	C
ss24740706	apeh_AP55_3	ROCHEBIO	RPAMM	r	SNP	G		A		A	A	A	A	A	A	A	G		A	A		G	A	G	A	A	G	A	G
ss46406383	mCV22696216	ABI	CRAMUS_MOUSE	r	SNP		G		A							A		A
ss136951680	ENSMUSSNP4568255	ENSEMBL	ENSEMBL_Sanger	r	SNP		G		A									A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16788489					SNP	C	C	T	T	T	T	T	T	T	T	T	C	T	T	T	C	C	T	C	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107973033 () rs orientation: reverse

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	1297 bp upstream
Bsn	bassoon	188 bp downstream
Cpgi22322	CpG island 22322	586 bp distal
Gm57046	predicted gene, 57046	within coordinates
Rr401675	regulatory region 401675	1112 bp downstream
Rr686707	regulatory region 686707	1538 bp distal
Rr686708	regulatory region 686708	1241 bp distal
Rr686709	regulatory region 686709	617 bp distal
Rr686710	regulatory region 686710	57 bp distal
Rr686711	regulatory region 686711	446 bp proximal
Rr686712	regulatory region 686712	668 bp proximal
Tssr87065	transcription start site region 87065	1138 bp downstream
Tssr87066	transcription start site region 87066	621 bp downstream
Tssr87067	transcription start site region 87067	583 bp downstream
Tssr91491	transcription start site region 91491	1347 bp upstream
Tssr91492	transcription start site region 91492	1292 bp upstream