rs16788491 SNP Detail

Summary

• ID
  rs16788491
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107972955 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                TTC
  TTTTTTTTTG TGGGGGGGGG GAGTGTTGTN NAAATTAAAA CAAAAAAGTT TACNTTGTAA
  GTGCAATGAC CCGAGTCCTC CACATGACCT TGTGAATTGT GTGCCGTCCT CCTGTGCTCT
  GTGAGAACTC GTGGTACTTC AGTGTCCCTC CCCTGTACTG TGACAAGGTA TTTCTGTGGT
  ATCAGAATAA AAGGACTTGA TATAAACAAC CTTCAGACAG TCTNGGGGTG ATTTCTGAAG
  TGGGAACACT TAGCCAAACA GGTAGATGCC AACGTTTGTG ACAGTNTTNT CCNCGATTAA
  AGAAAAAAAT GAGAAAGAGC AAANTTTNAG AAATGTTGGC ACAATTGAGG NNGAGTNAAC
  ACCAAGCCNT TCAAACATGA CCCTCCAGGA ANGTGCAAAG GCNTGTCCTA AGCCACCAGA
  CAGTTTTCAG GATCCTGGTT CCCAGGAGCT AGATGGGCAA GTGCTGCCCC CTGGTGCTNT
  M
  AAACAAGCTT TACATCTGCC TACCTTGTTC GAAACTCCCC CCCCCCCCCC AGTCCCCCAT
  GGGTGAGACT TTAATCCTT                                             
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB	LG/J	MOLF	MSM	NZB/BlNJ	NZW/Lac	PERA	SPRET/EiJ
ss24740703	apeh_AP54_10	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	A	C	C	C	C	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB	LG/J	MOLF	MSM	NZB/BlNJ	NZW/Lac	PERA	SPRET/EiJ
rs16788491					SNP	C	C	C	C	A	C	C	C	C	C	C	C	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107972955 () rs orientation: reverse

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	1219 bp upstream
Bsn	bassoon	266 bp downstream
Cpgi22322	CpG island 22322	508 bp distal
Gm57046	predicted gene, 57046	within coordinates
Rr401675	regulatory region 401675	1034 bp downstream
Rr686707	regulatory region 686707	1460 bp distal
Rr686708	regulatory region 686708	1163 bp distal
Rr686709	regulatory region 686709	539 bp distal
Rr686710	regulatory region 686710	within coordinates
Rr686711	regulatory region 686711	524 bp proximal
Rr686712	regulatory region 686712	746 bp proximal
Tssr87065	transcription start site region 87065	1060 bp downstream
Tssr87066	transcription start site region 87066	543 bp downstream
Tssr87067	transcription start site region 87067	505 bp downstream
Tssr91491	transcription start site region 91491	1269 bp upstream
Tssr91492	transcription start site region 91492	1214 bp upstream