rs16788493 SNP Detail

Summary

• ID
  rs16788493
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107973021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                              GGGGN
  CTGGGGGGGG GGGGGGGGAG GTTCGAACAA GGTAGGCAGA TGTAAAGCTT GTTTGANAGC
  ACCAGGGGGC AGCACTTGCC CATCTAGCTC CTGGGAACCA GGATCCTGAA AACTGTCTGG
  K
  GGCTTAGGAC ANGCCTTTGC ACNTTCCTGG AGGGTCATGT TTGAANGGCT TGGTGTTNAC
  NCNNCCTCAA TTGTGCCAAC ATTTCTGAAA TTTTGCTCTT TCTCATTTTT TTCTTTAATC
  GTGGANAANA CTGTCACAAA CGTTGGCATC TACCTGTTTG GCTAAGTGTT CCCACTTCAN
  AAATCACCCC NAGACTGTCT GAAGGTTGTT TATATCAAGT CCTTTTATTC TGATACCACA
  GAAATACCTT GTCACAGTAC AGGGGAGGGA CACTGAAGTA CCNCGAGTTC TCACAGAGCA
  CAGGAGGACG GCACACAATT CACAAGGTCA TGTGGAGGAC TCGGGTCATT GCACTTACAA
  TGTAAACTTG TTTGTNTNAC TTTGTACAGC ACTCTCCCCC CTCACAGAGA GAAGGAGAGA
  GAGGGGAGGA GGAGGGGAGG GAAAGCAAAA NCNAGACATA AAACCTNGGG GGAAAAAATG
  TAAAGGGCCC CC                                                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BALB/cJ	BUB	CAST/EiJ	SPRET/EiJ
ss24740705	apeh_AP55_2	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BALB/cJ	BUB	CAST/EiJ	SPRET/EiJ
rs16788493					SNP	G	G	G	G	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107973021 () rs orientation: forward

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	1285 bp upstream
Bsn	bassoon	200 bp downstream
Cpgi22322	CpG island 22322	574 bp distal
Gm57046	predicted gene, 57046	within coordinates
Rr401675	regulatory region 401675	1100 bp downstream
Rr686707	regulatory region 686707	1526 bp distal
Rr686708	regulatory region 686708	1229 bp distal
Rr686709	regulatory region 686709	605 bp distal
Rr686710	regulatory region 686710	45 bp distal
Rr686711	regulatory region 686711	458 bp proximal
Rr686712	regulatory region 686712	680 bp proximal
Tssr87065	transcription start site region 87065	1126 bp downstream
Tssr87066	transcription start site region 87066	609 bp downstream
Tssr87067	transcription start site region 87067	571 bp downstream
Tssr91491	transcription start site region 91491	1335 bp upstream
Tssr91492	transcription start site region 91492	1280 bp upstream