rs16788498 SNP Detail

Summary

• ID
  rs16788498
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107973082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                             GGGGNC
  TGGGGGGGGG GGGGGGGAGG TTCGAACAAG GTAGGCAGAT GTAAAGCTTG TTTGANAGCA
  CCAGGGGGCA GCACTTGCCC ATCTAGCTCC TGGGAACCAG GATCCTGAAA ACTGTCTGGN
  GGCTTAGGAC ANGCCTTTGC ACNTTCCTGG AGGGTCATGT TTGAANGGCT TGGTGTTNAC
  Y
  CNNCCTCAAT TGTGCCAACA TTTCTGAAAT TTTGCTCTTT CTCATTTTTT TCTTTAATCG
  TGGANAANAC TGTCACAAAC GTTGGCATCT ACCTGTTTGG CTAAGTGTTC CCACTTCANA
  AATCACCCCN AGACTGTCTG AAGGTTGTTT ATATCAAGTC CTTTTATTCT GATACCACAG
  AAATACCTTG TCACAGTACA GGGGAGGGAC ACTGAAGTAC CNCGAGTTCT CACAGAGCAC
  AGGAGGACGG CACACAATTC ACAAGGTCAT GTGGAGGACT CGGGTCATTG CACTTACAAT
  GTAAACTTGT TTGTNTNACT TTGTACAGCA CTCTCCCCCC TCACAGAGAG AAGGAGAGAG
  AGGGGAGGAG GAGGGGAGGG AAAGCAAAAN CNAGACATAA AACCTNGGGG GAAAAAATGT
  AAAGGGCCCC C                                                     
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24740710	apeh_AP55_7	ROCHEBIO	RPAMM	f	SNP	T	T	T	C	T	T	T	C	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16788498					SNP	T	T	T	C	T	T	T	C	T	T	T	T	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107973082 () rs orientation: forward

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	1346 bp upstream
Bsn	bassoon	139 bp downstream
Cpgi22322	CpG island 22322	635 bp distal
Gm57046	predicted gene, 57046	within coordinates
Rr401675	regulatory region 401675	1161 bp downstream
Rr686707	regulatory region 686707	1587 bp distal
Rr686708	regulatory region 686708	1290 bp distal
Rr686709	regulatory region 686709	666 bp distal
Rr686710	regulatory region 686710	106 bp distal
Rr686711	regulatory region 686711	397 bp proximal
Rr686712	regulatory region 686712	619 bp proximal
Tssr87065	transcription start site region 87065	1187 bp downstream
Tssr87066	transcription start site region 87066	670 bp downstream
Tssr87067	transcription start site region 87067	632 bp downstream
Tssr91491	transcription start site region 91491	1396 bp upstream
Tssr91492	transcription start site region 91492	1341 bp upstream