rs16788501 SNP Detail

Summary

• ID
  rs16788501
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107973147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                       G GGGNCTGGGG
  GGGGGGGGGG GGAGGTTCGA ACAAGGTAGG CAGATGTAAA GCTTGTTTGA NAGCACCAGG
  GGGCAGCACT TGCCCATCTA GCTCCTGGGA ACCAGGATCC TGAAAACTGT CTGGNGGCTT
  AGGACANGCC TTTGCACNTT CCTGGAGGGT CATGTTTGAA NGGCTTGGTG TTNACNCNNC
  CTCAATTGTG CCAACATTTC TGAAATTTTG CTCTTTCTCA TTTTTTTCTT TAATCGTGGA
  R
  AANACTGTCA CAAACGTTGG CATCTACCTG TTTGGCTAAG TGTTCCCACT TCANAAATCA
  CCCCNAGACT GTCTGAAGGT TGTTTATATC AAGTCCTTTT ATTCTGATAC CACAGAAATA
  CCTTGTCACA GTACAGGGGA GGGACACTGA AGTACCNCGA GTTCTCACAG AGCACAGGAG
  GACGGCACAC AATTCACAAG GTCATGTGGA GGACTCGGGT CATTGCACTT ACAATGTAAA
  CTTGTTTGTN TNACTTTGTA CAGCACTCTC CCCCCTCACA GAGAGAAGGA GAGAGAGGGG
  AGGAGGAGGG GAGGGAAAGC AAAANCNAGA CATAAAACCT NGGGGGAAAA AATGTAAAGG
  GCCCCC                                                           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	BALB/cJ	BUB	CAST/EiJ	DBA/2J	SPRET/EiJ
ss24740713	apeh_AP55_10	ROCHEBIO	RPAMM	f	SNP	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	BALB/cJ	BUB	CAST/EiJ	DBA/2J	SPRET/EiJ
rs16788501					SNP	G	A	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107973147 () rs orientation: forward

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	1411 bp upstream
Bsn	bassoon	74 bp downstream
Cpgi22322	CpG island 22322	700 bp distal
Gm57046	predicted gene, 57046	within coordinates
Rr401675	regulatory region 401675	1226 bp downstream
Rr686707	regulatory region 686707	1652 bp distal
Rr686708	regulatory region 686708	1355 bp distal
Rr686709	regulatory region 686709	731 bp distal
Rr686710	regulatory region 686710	171 bp distal
Rr686711	regulatory region 686711	332 bp proximal
Rr686712	regulatory region 686712	554 bp proximal
Tssr87065	transcription start site region 87065	1252 bp downstream
Tssr87066	transcription start site region 87066	735 bp downstream
Tssr87067	transcription start site region 87067	697 bp downstream
Tssr91491	transcription start site region 91491	1461 bp upstream
Tssr91492	transcription start site region 91492	1406 bp upstream