rs16788503 SNP Detail

Summary

• ID
  rs16788503
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107973201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                              GGGGN
  CTGGGGGGGG GGGGGGGGAG GTTCGAACAA GGTAGGCAGA TGTAAAGCTT GTTTGANAGC
  ACCAGGGGGC AGCACTTGCC CATCTAGCTC CTGGGAACCA GGATCCTGAA AACTGTCTGG
  NGGCTTAGGA CANGCCTTTG CACNTTCCTG GAGGGTCATG TTTGAANGGC TTGGTGTTNA
  CNCNNCCTCA ATTGTGCCAA CATTTCTGAA ATTTTGCTCT TTCTCATTTT TTTCTTTAAT
  CGTGGANAAN ACTGTCACAA ACGTTGGCAT CTACCTGTTT GGCTAAGTGT TCCCACTTCA
  R
  AAATCACCCC NAGACTGTCT GAAGGTTGTT TATATCAAGT CCTTTTATTC TGATACCACA
  GAAATACCTT GTCACAGTAC AGGGGAGGGA CACTGAAGTA CCNCGAGTTC TCACAGAGCA
  CAGGAGGACG GCACACAATT CACAAGGTCA TGTGGAGGAC TCGGGTCATT GCACTTACAA
  TGTAAACTTG TTTGTNTNAC TTTGTACAGC ACTCTCCCCC CTCACAGAGA GAAGGAGAGA
  GAGGGGAGGA GGAGGGGAGG GAAAGCAAAA NCNAGACATA AAACCTNGGG GGAAAAAATG
  TAAAGGGCCC CC                                                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	CAST/EiJ	DBA/2J	NZW/Lac	SPRET/EiJ
ss24740715	apeh_AP55_12	ROCHEBIO	RPAMM	f	SNP	G	A	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	CAST/EiJ	DBA/2J	NZW/Lac	SPRET/EiJ
rs16788503					SNP	G	A	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107973201 () rs orientation: forward

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	1465 bp upstream
Bsn	bassoon	20 bp downstream
Cpgi22322	CpG island 22322	754 bp distal
Gm57046	predicted gene, 57046	within coordinates
Rr401675	regulatory region 401675	1280 bp downstream
Rr686707	regulatory region 686707	1706 bp distal
Rr686708	regulatory region 686708	1409 bp distal
Rr686709	regulatory region 686709	785 bp distal
Rr686710	regulatory region 686710	225 bp distal
Rr686711	regulatory region 686711	278 bp proximal
Rr686712	regulatory region 686712	500 bp proximal
Tssr87065	transcription start site region 87065	1306 bp downstream
Tssr87066	transcription start site region 87066	789 bp downstream
Tssr87067	transcription start site region 87067	751 bp downstream
Tssr91491	transcription start site region 91491	1515 bp upstream
Tssr91492	transcription start site region 91492	1460 bp upstream