rs16788504 SNP Detail

Summary

• ID
  rs16788504
• Variation Type
  SNP
• Alleles
  A/C/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107973212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                  GGGGNC TGGGGGGGGG
  GGGGGGGAGG TTCGAACAAG GTAGGCAGAT GTAAAGCTTG TTTGANAGCA CCAGGGGGCA
  GCACTTGCCC ATCTAGCTCC TGGGAACCAG GATCCTGAAA ACTGTCTGGN GGCTTAGGAC
  ANGCCTTTGC ACNTTCCTGG AGGGTCATGT TTGAANGGCT TGGTGTTNAC NCNNCCTCAA
  TTGTGCCAAC ATTTCTGAAA TTTTGCTCTT TCTCATTTTT TTCTTTAATC GTGGANAANA
  CTGTCACAAA CGTTGGCATC TACCTGTTTG GCTAAGTGTT CCCACTTCAN AAATCACCCC
  V
  AGACTGTCTG AAGGTTGTTT ATATCAAGTC CTTTTATTCT GATACCACAG AAATACCTTG
  TCACAGTACA GGGGAGGGAC ACTGAAGTAC CNCGAGTTCT CACAGAGCAC AGGAGGACGG
  CACACAATTC ACAAGGTCAT GTGGAGGACT CGGGTCATTG CACTTACAAT GTAAACTTGT
  TTGTNTNACT TTGTACAGCA CTCTCCCCCC TCACAGAGAG AAGGAGAGAG AGGGGAGGAG
  GAGGGGAGGG AAAGCAAAAN CNAGACATAA AACCTNGGGG GAAAAAATGT AAAGGGCCCC
  C                                                                
  
  V = A/C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	CAST/EiJ	MSM	PERA	SPRET/EiJ
ss24740716	apeh_AP55_13	ROCHEBIO	RPAMM	f	SNP	G	A	A	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	CAST/EiJ	MSM	PERA	SPRET/EiJ
rs16788504					SNP	G	A	A	C	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107973212 () rs orientation: forward

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	1476 bp upstream
Bsn	bassoon	9 bp downstream
Cpgi22322	CpG island 22322	765 bp distal
Gm57046	predicted gene, 57046	within coordinates
Rr401675	regulatory region 401675	1291 bp downstream
Rr686707	regulatory region 686707	1717 bp distal
Rr686708	regulatory region 686708	1420 bp distal
Rr686709	regulatory region 686709	796 bp distal
Rr686710	regulatory region 686710	236 bp distal
Rr686711	regulatory region 686711	267 bp proximal
Rr686712	regulatory region 686712	489 bp proximal
Tssr87065	transcription start site region 87065	1317 bp downstream
Tssr87066	transcription start site region 87066	800 bp downstream
Tssr87067	transcription start site region 87067	762 bp downstream
Tssr91491	transcription start site region 91491	1526 bp upstream
Tssr91492	transcription start site region 91492	1471 bp upstream