rs16788505 SNP Detail

Summary

• ID
  rs16788505
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:107973304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

               GGGGNCTG GGGGGGGGGG GGGGGAGGTT CGAACAAGGT AGGCAGATGT
  AAAGCTTGTT TGANAGCACC AGGGGGCAGC ACTTGCCCAT CTAGCTCCTG GGAACCAGGA
  TCCTGAAAAC TGTCTGGNGG CTTAGGACAN GCCTTTGCAC NTTCCTGGAG GGTCATGTTT
  GAANGGCTTG GTGTTNACNC NNCCTCAATT GTGCCAACAT TTCTGAAATT TTGCTCTTTC
  TCATTTTTTT CTTTAATCGT GGANAANACT GTCACAAACG TTGGCATCTA CCTGTTTGGC
  TAAGTGTTCC CACTTCANAA ATCACCCCNA GACTGTCTGA AGGTTGTTTA TATCAAGTCC
  TTTTATTCTG ATACCACAGA AATACCTTGT CACAGTACAG GGGAGGGACA CTGAAGTACC
  M
  CGAGTTCTCA CAGAGCACAG GAGGACGGCA CACAATTCAC AAGGTCATGT GGAGGACTCG
  GGTCATTGCA CTTACAATGT AAACTTGTTT GTNTNACTTT GTACAGCACT CTCCCCCCTC
  ACAGAGAGAA GGAGAGAGAG GGGAGGAGGA GGGGAGGGAA AGCAAAANCN AGACATAAAA
  CCTNGGGGGA AAAAATGTAA AGGGCCCCC                                  
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	BUB	CAST/EiJ	DBA/2J	FVB	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24740717	apeh_AP55_14	ROCHEBIO	RPAMM	f	SNP	A	C	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	BUB	CAST/EiJ	DBA/2J	FVB	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16788505					SNP	A	C	A	A	A	A	A	A	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107973304 () rs orientation: forward

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	1568 bp upstream
Bsn	bassoon	mRNA-UTR
Cpgi22322	CpG island 22322	857 bp distal
Gm57046	predicted gene, 57046	within coordinates
Rr401675	regulatory region 401675	1383 bp downstream
Rr686707	regulatory region 686707	1809 bp distal
Rr686708	regulatory region 686708	1512 bp distal
Rr686709	regulatory region 686709	888 bp distal
Rr686710	regulatory region 686710	328 bp distal
Rr686711	regulatory region 686711	175 bp proximal
Rr686712	regulatory region 686712	397 bp proximal
Tssr87065	transcription start site region 87065	1409 bp downstream
Tssr87066	transcription start site region 87066	892 bp downstream
Tssr87067	transcription start site region 87067	854 bp downstream
Tssr91491	transcription start site region 91491	1618 bp upstream
Tssr91492	transcription start site region 91492	1563 bp upstream